PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016515736.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 335aa    MW: 38291.9 Da    PI: 10.1955
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016515736.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-16126215198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f k ++ps+v    +l lpk+f++ h   +  ++t++l de+g++++  +  ++++    l++GW++F  +++L  gD ++F+l++  +  l+v 
  XP_016515736.1 126 FAKCMLPSNVAHGFWLHLPKSFCNMHL--PSHDTTVILVDEWGNEYKTSYLLERNG----LSAGWRGFSMSHRLLKGDLLIFRLIEPCK--LKVY 212
                     889********************8884..345679***************888888....***********************997444..5888 PP

                     EE- CS
              B3  96 vfr 98 
                     ++r
  XP_016515736.1 213 IIR 215
                     877 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.8E-19118217IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.45E-22120217IPR015300DNA-binding pseudobarrel domain
CDDcd100175.33E-22124215No hitNo description
PfamPF023621.5E-13126215IPR003340B3 DNA binding domain
PROSITE profilePS5086312.026126217IPR003340B3 DNA binding domain
SMARTSM010199.4E-19126217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MEDRNLISVK PVTKRWKEGQ QKVGHHKLKP TSYSSASTST QTHPSPKIKR VQLDRKNMVP  60
KKPRSVKSKA KRVKSNHPRK AESSKLKGTN KRTRINDLYD DVEAKFSVME RAERILSSLA  120
DEFPSFAKCM LPSNVAHGFW LHLPKSFCNM HLPSHDTTVI LVDEWGNEYK TSYLLERNGL  180
SAGWRGFSMS HRLLKGDLLI FRLIEPCKLK VYIIRVNGRD VVDAALCLMN FDALKKSTDL  240
DLAQKDNRKR KKAKRLVEPF YVDFSKPKEY IQNDSHSAVD LNVSPSVHRS ETNSEVLDSE  300
VPEGSDVINR LQSNEICCSE TSFLHDNPQK SISCR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247251RKRKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754405e-82HG975440.1 Solanum pennellii chromosome ch01, complete genome.
GenBankHG9755135e-82HG975513.1 Solanum lycopersicum chromosome ch01, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515736.10.0PREDICTED: B3 domain-containing protein At5g42700-like isoform X1
TrEMBLA0A0V0HWM90.0A0A0V0HWM9_SOLCH; Putative B3 domain-containing protein-like
STRINGSolyc01g108130.2.11e-179(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16282371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-37B3 family protein